Wednesday, 19 July 2023

Spotlight on: Schol-AR

This year, the judges have selected a shortlist of four for the ALPSP Award for Innovation in Publishing 2023. We also invite ALPSP members to take part in the judging process before the closing date of 31 July. Vote online

The finalists will be showcased in a lightning presentation session at the ALPSP Conference on 13 September, with the winners announced at the ALPSP Conference Awards Dinner on 14 September in Manchester.

In this series, we learn more about each of the finalists.

Tell us about your organization

Ardist Inc. is a California-based startup dedicated to enhancing the distribution of scientific data. Our team comprises talented individuals focused on providing technological tools to support the next generation of scientific communication for publishers, authors, and readers. Founded in 2019, Ardist received the University of Southern California Stevens Technology Commercialization Award in 2021 for our academic-rooted developments. In 2022, our first paper on the Schol-AR project was published in Nature Scientific Data (View Augmented at https://www.Schol-AR.io/publications/ard2022). As of 2023, we have been fully integrated into numerous journals, publishers, and international conference venues.


What is the project/product that you submitted for the Awards?

Schol-AR transforms standard scientific PDF articles into fully digital entities, enabling the inclusion of interactive digital media and scientific data directly into manuscripts. Schol-AR is designed specifically to provide full digital integration in a manner that benefits the publishers, authors, and readers of the research community. An introductory video can be seen at https://www.Schol-AR.io/demo/

Readers can use Schol-AR to view any scientific data associated with an article, poster, or other communication via simple “point to view” mobile access or “click to open” browser access, which opens both an article and its data simultaneously. With Schol-AR readers don’t need to find URL links, gain access to databases, or install software to view specific types of data. Instead, we provide data intuitively and immediately, through the preferred medium of the reader. 

Authors can quickly and easily augment data and digital media into their publications through an accessible web interface at www.Schol-AR.io. Creating augmentations does not require any technical writing like XML, programming knowledge, or any other technical capabilities. Instead, authors simply upload the figures they would like to augment, and the data they would like to augment them with. Once done, authors immediately receive a QR code that when included in their document converts it into a fully digital augmented paper. The augmentation creation process is designed to take less than five minutes and allow authors to continue writing standard PDFs with the tools they are accustomed to. A demonstration of the process can be seen at https://www.Schol-AR.io/intro/.


Publishers can integrate Schol-AR with no technical requirements whatsoever, entirely averting the costly and risky technical overhauls otherwise needed to provide their readers and authors modern digital capabilities. Simply stated, if a publisher can distribute a PDF, then all Schol-AR’s capabilities are already fully available to them. This design spares publishers the time and effort necessary to develop, deploy, and maintain complex digital systems as well as providing technical support for authors who utilize those systems. Instead, publishers receive fully digital-inclusive augmented articles from the first stage of the submission process. Schol-AR augmented articles also streamline the editorial process, as the augmentations are seamlessly accessible to editors and peer reviewers throughout submission, just as they are to all readers after full publication.

Tell us a little about how it works and the team behind it

Schol-AR was developed by the Ardist team to enhance scientific communication through fully accessible digital integration. Our system utilizes augmented reality (AR) and computer vision (CV) technologies to seamlessly layer data onto figures for easy viewing. Instead of attaching data to specific submission systems, we directly attach it to the figures, making the data viewable wherever the images are seen. The framework supporting these capabilities encompasses technologies across iOS, Android, webGL, web server, and cloud computing. Despite the complexity of Schol-AR's infrastructure, the resulting product offers simple and intuitive access for both readers and authors.

In what ways do you think it demonstrates innovation? 

Schol-AR provides an entire digital overhaul to the journal article in a way that is seamlessly integrated into the existing publishing system. Instead of attempting to replace the PDF with a fully digital standard, we augment the PDF with the simple addition of a QR code. This approach removes the considerable barrier of requiring every publisher to implement a new technology into their systems in order to provide digitally inclusive documents, ultimately enabling immediate global accessibility across all journals everywhere. This does not only benefit publishers, but also authors who no longer need to consider if a particular submission system will accommodate their specific form of data. Once augmented through Schol-AR, a document can be submitted anywhere and data will automatically accompany it. Additionally, Schol-AR provides dramatically improved accessibility to readers in both digital accessed and printed articles, facilitating intuitive data inclusion across mediums. Lastly, Schol-AR is broadly supportive of multiple discipline-spanning media formats including interactive 3D models, image stacks, videos, and volumetric data. 

What are your plans for the future?

The Schol-AR project has been implemented across numerous journals, publishers, and conference venues to improve the data accessibility of journal articles and posters. However, the project is still new, and we have many plans to expand both the general adoption of Schol-AR as well as the services we provide. For example, while augmentations can currently be automatically created from numerous types of media, we plan to expand support across a much wider range of data formats and associated visualization styles. Further, our digital architecture is well suited to provide additional capabilities, such as communication between authors and readers and access to numerous additional article-related digital services. This project is just getting started, and we are eager to continue advancing digital scholarly communication with Schol-AR. 

About the author

Tyler Ard is the CEO of Ardist Inc., and Assistant Professor at the USC Stevens Neuroimaging and Informatics Institute. Dr. Ard has decades of experience in cutting edge data visualization, publication, research, and digital distribution. 

More information

https://www.Schol-AR.io/demo/



Tuesday, 18 July 2023

Spotlight on: BMJ Impact Analytics

This year, the judges have selected a shortlist of four for the ALPSP Award for Innovation in Publishing 2023. We also invite ALPSP members to take part in the judging process before the closing date of 31 July. Vote online

The finalists will be showcased in a lightning presentation session at the ALPSP Conference on 13 September, with the winners announced at the ALPSP Conference Awards Dinner on 14 September in Manchester.

In this series, we learn more about each of the finalists.



Tell us about your organization

As a global healthcare knowledge provider with a vision for a healthier world, BMJ publishes one of the world’s top five most cited general medical journals, The BMJ, and over 65 specialty journals. BMJ also offers digital professional development courses and clinical decision support tools to help health professionals improve the quality of healthcare delivery. 

What is the project/product that you submitted for the Awards?

BMJ Impact Analytics is the first impact tool focused on health and social care. Developed in collaboration with Overton, BMJ Impact Analytics makes it easy to find, track, and share the real-world impact of health and medical research. It uniquely shows direct links to patient outcomes (decision support tools) and provides citations in context.

Tell us a little about how it works and the team behind it

Research that improves patients' lives matters deeply to the funders, institutions and researchers but is time-consuming and difficult to track. Traditional scholarly metrics were used to evaluate the impact of this research in the absence of more targeted analysis that specifically relates to health improvement. 

BMJ Impact Analytics was created after extensive engagement and research with medical departments, researchers and funders. It was developed in collaboration with pioneering technology start-up Overton, whose mission is to support evidence-based decision-making worldwide by tracking the reach and impact of research in policy. Our co-development combines BMJ's health expertise with Overton's data knowledge to address the challenge of finding evidence of their real-world impact of health and medical research. Funders, institutions, and researchers can now effectively find evidence of their influence; by tracking where their research is cited in clinical guidance and health policy worldwide.

In what ways do you think it demonstrates innovation?

  • BMJ Impact Analytics is the only impact tool created in collaboration with medical departments, researchers and funders, specifically addressing the needs of the medical research community. 
  • It is the most up-to-date and comprehensive tool available to track and share the real-world impact of medical and health research. 
  • Strengthened by continuous feedback from medical departments, researchers and funders, this powerful tool encompasses the broadest range of the best available medical sources worldwide, including local guidelines and decision-support tools used by healthcare professionals at the point of care.
  • BMJ Impact Analytics uses modern technology and machine learning to help discover evidence of impact,  provides context on how research was used and uniquely shows where research is making a difference closest to the patient. 

What are your plans for the future?

Since launching earlier this year, we have been delighted with how the health and medical research communities have received BMJ Impact Analytics. We will continue to work closely with these groups as part of our user-centred approach to developing and prioritising new features on the roadmap. 


About the author

Michelle Phillips is the Open Research Product Manager at BMJ. With over 15 years of publishing experience, she is passionate about real-world impact. She has been very fortunate to have collaborated with many inspiring researchers on bridging the gap between research, policy and, ultimately, real-world outcomes.

More information:

Website: https://impactanalytics.bmj.com/

Twitter: @bmj_company


Thursday, 6 July 2023

Spotlight on: IOP Publishing double anonymous peer review and transparent peer review

This year, the judges have selected a shortlist of four for the new ALPSP Impact AwardWe also invite ALPSP members to take part in the judging process before the closing date of 31 July. Vote online

The finalists will be showcased in a lightning presentation session at the ALPSP Conference on 13 September, with the winners announced at the ALPSP Conference Awards Dinner on 14 September in Manchester.

In this series, we learn more about each of the finalists.


IOPP logo

Tell us about your organization

IOP Publishing is a society-owned scientific publisher, delivering impact, recognition, and value to the scientific community. Our purpose is to expand the world of physics, offering a portfolio of journals, eBooks, conference proceedings and science news resources globally. Our aim is to publish the latest and best research in the physical sciences and beyond, and make that research available to as many people as possible.

As a wholly owned subsidiary of the Institute of Physics (IOP), a not-for-profit society, our net income goes directly to the IOP to assist their mission to help everyone build their knowledge of physics and to provide professional support for physicists.

What is the project/product that you submitted for the Awards?

To fight bias and lack of transparency in peer review, IOP Publishing has introduced two complementing peer review methods: double anonymous peer review and transparent peer review. Double anonymous review is applied during the peer review process, before acceptance, and transparent review is delivered post-acceptance through the publication of the reviewer reports and author responses. Together these two processes complement each other, allowing for maximum objectivity during the review process, and maximum transparency after publication. The first results show that these two complementary methods have a positive impact on the peer review process. They help tackle the significant under-representation of authors due to gender, racial, affiliation and geographical bias and address the lack of transparency and sharing of best practices in peer review.  

Tell us a little about how it works and the team behind it

Introducing double anonymous peer review involved not only technological changes to our submission system (Clarivate), but also some considerable changes to our internal processes. Setting up transparent peer review was a major technological challenge and, to do so, we partnered with Publons to develop a highly efficient solution in which the relevant peer review data is automatically transferred between systems (peer review, production and web platforms) via APIs, without the need for manual intervention. A key element of the introduction of these two peer review methods was communication with our author and reviewer communities making sure they could appreciate why we were making these changes. It’s taken us about twelve months to migrate all our journals onto the new workflows, with the help from a specialist project team of editorial, technical, marketing and other supporting colleagues. 

In what ways do you think it demonstrates innovation?

IOP Publishing (IOPP) is the first society publisher to combine double anonymous peer review and transparent peer review throughout its entire portfolio of owned open access journals. Even though, double anonymous peer review and transparent peer review are not new concepts in themselves, combining the two methods is innovative. The two peer review methods complement each other and together they deliver significant positive change to our peer review process and we’re beginning to see some fascinating results. For example, authors from Africa are more than twice as likely to have their work accepted under double anonymous, compared to single anonymous! 

What are your plans for the future?

We are planning to roll out transparent peer review to all of our journals (including our partner journals) by the end of 2024. At the moment, we only publish the peer review history if both the authors and reviewers of a paper opt in. We may remove the opt in/out option so that all reviewer reports and author replies will be made public alongside all published papers. With regards to the roll-out of our double anonymous peer review policy, we intend to share our learnings and insights and are exploring automated solutions to help more authors effectively anonymise their work. 

About the author

Kim Eggleton, Peer Review and Research Integrity Manager, IOP Publishing

Twitter: @IOPPublishing
Facebook: https://www.facebook.com/ioppublishing/
LinkedIn: IOP Publishing


Monday, 24 April 2023

How do we overcome research misconduct?

Guest post by Sami Benchekroun, CEO and Co-founder, Morressier

As the volume of research output grows larger and larger each year, new forms of research misconduct appear around the edges. While research misconduct represents a small percentage of overall published works, each instance seems much larger under the magnifying glass of public scrutiny. Without public trust, science has no power, and research misconduct is a disease that threatens the validity of our enterprise as a whole. Today, we have treatments to this disease - like retractions - but these treatments can still leave publishers scarred and damaged in the long term. 

What we need is a preventative and proactive solution. Something to stop research misconduct before it happens. In order to create that solution, we have to start by understanding why research misconduct happens, and address it on the industry level, not just within our workflows. 

Why does research misconduct happen?

Research misconduct happens when a system is under pressure. There are limited resources, and a constant call to do things faster. On the part of the researcher, they face immense pressure to publish, in order to advance their careers and build their personal reputation. This pressure leaves them vulnerable to paper mills and predatory journals, and perhaps more likely to cut corners by engaging in misconduct themselves, or simply making a mistake because there’s little time to perfect a paper. Within our publishing and peer review workflows, there are issues of scale and a pressure to review more papers, faster. When there’s less time to review each paper, there’s less time to evaluate and identify mistakes or issues that would make a piece of research unsuitable for publication. 

On top of the growing pressures on workflows and workloads, the broader business models of scholarly publishing have shifted, leading to an additional pressure from the world of OA. The revenue models for OA publishing have changed the currency of scholarly publishing from the journal volume to the journal article, from subscription to an article based economy. Publishing a greater volume of content seems to be the way publishers choose to ensure ongoing revenue streams. 

Add to this overstressed system emerging forms of misconduct. In the last year, we’ve seen a huge volume of opinions and perspectives on the role of AI-generated content. Is it a tool, is it a replacement? The role of AI in publishing is being decided now, but as is often the case with technology, use is outpacing regulation. 

So what now? 

Today, we treat research misconduct reactively. We retract individual articles, which is a critical show of transparency as part of the overall trustworthiness of science, but is misunderstood publicly.

So what would a more proactive approach really look like? While research integrity can be guarded with improvements to the editorial and peer review process, we need to go broader. It needs to be a broader industry effort that addresses some of the underlying pressures for key stakeholders. There’s a path to providing relief on the pressure to publish if we can evolve the criteria for tenure processes, career progression, and evaluation. There are strategies to make the peer review process more streamlined, so it's less time consuming and easier to engage with, but also more transparent so reviewers get the recognition they deserve. A more streamlined editorial process will also support the publisher’s need to publish more research. 

Technology’s role is twofold. First, with streamlined processes, and enhanced integrity checks that can review manuscripts at scale, the process becomes faster and easier. Second, technology can support the improvement of papers from researchers for whom English is not a first language, perhaps broadening our published output to include more contributions from the Global South or also other non-English speaking countries. Here is a solution that would democratize the world of scholarly publishing: helping publishers increase their output while helping improve equity in the research community. 

Risks and priorities for research integrity

We have to balance the need for research integrity with the need to publish research more efficiently. At first glance it might seem as though curing research misconduct has the potential to slow science down, adding more layers of checks, more rigorous reviews, and complicated institutional changes that take time to fully adopt. Even further, prioritizing research integrity is an investment: it's expensive, and it can take a long time to truly see progress with point solutions or solutions not integrated throughout the publishing infrastructure.

But what do we, as an industry, risk creating if we do not approach broad, scalable changes to our research integrity infrastructure? An ecosystem that struggles to scale, one that becomes more crowded and loses its focus on quality. Without research integrity interventions, whether they are embedded in our technology or addressed in the transformation of our peer review workflows and institutional pressures, we lose trust. The public trust in science is already at risk. 

This is also a critical time for machine learning. If we feed our AI tools fraudulent data, or anything other than the highest quality science, we risk embedding biases in the machine learning process that will be increasingly harder and harder to correct. If we start exploring AI in the scientific review process or publishing program, it has to be with research integrity at the very centre of our focus. We’re approaching an inflection point with AI. If developed properly, it can be focused on making our systems, like peer review, more accurate, transparent, and trustworthy. But how, when the current system is imperfect and under strain? 

We’re not the only industry asking this question: recently leaders across the tech industry, including Steve Wozniack and Elon Musk, signed an open letter calling on the industry to pause giant AI experiments. In this letter they call for developing AI systems only after we are confident of their effects, and the need for independent review before training new systems. What they propose is effectively peer review for approval to launch new general AIs. For scholarly publishing, misinformation is a massive risk. We risk losing control over information, and even the ability to validate information, if we do not take care about the inputs for machine learning, nor how we allow AI-generated research to fill our systems. To address this challenge will take collaboration not just within our industry but with experts leading the technology revolution as well. 

To close, the solution to research misconduct requires more than changes to our publishing workflows. It requires this industry to look at the bigger picture, the longer term, and start building for the future today. We need to build the technology for all stakeholders in the research integrity ecosystem, from researchers to publishers to readers.  

About the Author

Sami Benchekroun is the Co-Founder and CEO of Morressier, the home of workflows to transform how science is discovered, disseminated and analyzed. He drives Morressier's vision forward and is dedicated to accelerating scientific breakthroughs by making the entire scholarly process, from the first spark on, much more transparent. Sami has over ten years of experience in academic conferences, scholarly communications, and entrepreneurship, and has a background studying management at ESCP Europe. Sami Benchekroun is also a Non-Executive Director of ALPSP

Morressier is a member of ALPSP. Find out more: https://www.morressier.com/

Friday, 27 January 2023

Mastodon versus Twitter - is this the research community's new digital town square?

Guest post by Lou Peck, The International Bunch.

When Elon Musk bought Twitter " to help humanity", did he envisage a mass migration to other communication channels? Does he even care? It's not like Twitter was not-for-profit before Elon Musk bought it, so why the sudden migration? Maybe it was the final push to kick people into gear and look at what alternatives are out there. Elon refers to Twitter as the 'digital town square', but are the new kids on the block actually the new place to be?

We have been monitoring Twitter in the research ecosystem, and clients have been reaching out, asking us to research and help them learn what the word on the street is. So we thought we would compile some recent research to help you to decide whether you need to include Mastodon or any other social channel in your strategy, as well as Twitter.

What even is Mastodon?

Mastodon takes its name inspiration from a large elephant-like extinct mammal of the Miocene to Pleistocene epochs (10-11,000 years ago) that belonged to the Mammutidae family. Living in herds, they roamed North and Central America and were predominately forest dwelling.

By Dantheman9758 at the English Wikipedia, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=4289640


Mastodon is a software development non-profit from Germany founded in 2016 by Eugen Rochko and offers microblogging in an open source realm. There are currently four members in the core team - Eugen, Claire, Felix Hlatky and Dopartwo and 1.8m monthly active users (+385% as of 14 November 2022). Funded by sponsors, there are three packages to support Mastodon, with the lowest already sold out. You may notice the logo in blue, but this is being phased out as part of their new rebrand to purple. I haven't been able to yet find out why they named their business after an extinct mammal, especially one whose name (named by French naturalist Georges Cuvier in the early 19th century) translates to 'nipple tooth' because of their distinctly shaped small teeth! 

Why Mastodon?

The four key positioning statements for Mastodon centre on being decentralized, open source, not for sale and interoperable. Not limited by commercial strategy with algorithms to show you what they think you want to digest, and no ads to 'waste your time', Mastodon shows you anyone you follow in chronological order on your feed to 'make your corner of the internet a little more like you'. Choose from any of the community servers (AKA instances) that best fit you as an individual (or host your own) and join Mastodon.

Businessinsider reports a 657% growth in downloads for Mastodon in the last 12 days (1-12 November 2022).

Whilst authors are using it to share and talk about their work, interestingly, a number of preprint bots have already been set up to follow:

A researcher's perspective

David Brückner has a really interesting thread on Twitter from 30 October 2022, where he concludes the pros and cons of using Mastodon over Twitter, and practical tips for transitioning to Mastodon from Twitter for #ScienceTwitter:

  • open-source 
  • decentralized: run on a federation of servers 
  • no ads! 
  • no attention-algorithm: the timeline is chronological! 
  • 500 instead of 140 characters in each "toot" 
  • key features that we need conserved: mentions, hashtags, retweets, likes
David mentions a 500-character limit, but that is the default. In fact, it can be reconfigured - QOTO.ORG, the STEM-based instanceIn fact, it can be reconfigured - QOTO.ORG, the STEM-based instance, allows around 65,000 characters. David also mentions in his Cons that you can't post videos - but you can post all types of content so for him, it might have been that with such an influx of users, some functionality was reduced temporarily or maybe the server David uses is restricted. 

On 30 October 2022, David asked his Twitter community what they thought through a Twitter poll about Mastodon. Nearly 18% said they would stay on Twitter, over a quarter said they would try it, and a fifth said they would use both. At present, many publishers, libraries and intermediaries are keeping an eye on Mastodon, and if active usage and sign-ups continue, Mastodon should be considered as part of your strategy. We just need to be mindful of its longevity and future-proofing.

David has another well-engaged thread on Twitter listing his top five tips for transitioning over to Mastodon, including:
  1. Find your friends on #Mastodon
  2. Sync your Twitter and #Mastodon account
  3. Choosing servers
  4. Follow preprint bots
  5. Mobile apps

How long will, as David puts it, 'the science party' remain on Mastodon and how long will they continue using it? Users seem divided. I found a server I liked the sound of and have created my own profile. I'm finding it a little clunky to navigate but I'm sure once I get used to it, I'll be more active on it. I've always found Twitter too noisy but this seems like a much better alternative where I can actually see what people are posting that I am interested in following.

As with Scholar Social member Cameron Neylon, I wonder where these social channels sit with altmetrics providers - are they including these in their algorithms? You can certainly explore preprints and published content on Mastodon being shared with a researcher's community. How is this being translated into impact when the service is not yet set up - discover the GitHub thread.

With hashtags like #GoodbyeTwitter and #TwitterMigration is Twitter doomed? Probably not. But what about Twitter Blue ($8 a month) as a revenue stream for Twitter? How will this change the quality of content there? Being payment verified means you will be prioritized, and always at the top of comments and searches. Bots and trolls will get pushed further down in the feeds. Will this help? Time will tell.

Casey Fiesler, an information researcher at the University of Colorado, Boulder, studied the migration of online communities, comments to Science.

Mark McCaughrean, an astronomer at the European Space Agency, also comments to Science.

There is absolutely a shift to Mastodon, but let's take a quick look at what else is out there.

What are the alternatives to Twitter?

  1. Mastodon 
  2. Bluesky (from the cofounder of Twitter, founded in 2019)
  3. Tumblr (recent sign ups include Deadpool's Ryan Reynolds and Wonder Woman's Lynda Carter)
  4. Tribel
  5. cohost 
  6. Log off - literally as it says on the tin - just sign out and log off!
There are so many more to mention but others we know are worth a mention include Reddit - a favourite of mine to research trends and discussions amongst the research community and WeChat for connecting with Chinese researchers. What does this mean for sector-specific channels? Interesting to see how Academia.edu, Researcher App, and ResearchGate develop and diversify. What about ORCID - does this give them a new avenue to explore, and even help with the issue around duplicate accounts?

To include Mastodon in your strategy, or not to include?

Whilst we are in the early stages of trying out new social channels and working out what is right for us, Mastodon is worth keeping an eye on and including in your current strategy. Maybe we will see publishers and intermediaries sponsor services like Mastodon as part of their positioning strategy in an open environment. If anything, I hope these social channels recognize the importance of this industry and Github tickets around DOIs move up the list in terms of priority and are implemented. 

Whether I'll be writing an article in a year's time - the demise of Twitter and the rise of Mastodon in the research ecosystem - who knows! Maybe someone will create a server on Mastodon (please....) for the academic publishing community so we ourselves have a place where we can chat and be friends...

Additional sources and reading:




The International Bunch is a member of ALPSP. 

Friday, 18 November 2022

The Evolution and Future of Peer Review

In this guest post, Michael Casp and Anna Jester look back at the ALPSP 2022 Annual Conference and Awards. 

Wiley logo

Peer review in the Digital Age relies heavily on email communications and web-based peer review platforms to contact reviewers and organize recommendations. In many ways, peer review today is just a recreation of the pre-internet mail, fax, and file cabinet template, but pasted online.  With the current advancements in preprints, social media, and communication platforms, it is possible – even likely – that the model of peer reviewing, and the technology that supports it, have more evolutions to come.

As communication begins to move beyond traditional text formats, so does content. Getting “beyond the PDF” has been a staple at scholarly publishing conferences for years, and as it becomes more commonplace, we are navigating its demands on the peer review process.

But it’s not just about technology. We must also focus on developing and empowering the next generation of reviewers in order to maintain a robust and sustainable reviewer pool. This happens through teaching and developing early academics, which can offer a technology-versed, diverse pool of reviewers that can continue to utilize the technologies we develop.

At the ALPSP 2022 Conference we were treated to many innovative ideas that will have a direct impact on peer review, potentially changing it and hopefully improving it, for the researchers and publishers and ultimately providing better value for society.

Beyond Email

Peer review’s reliance on email is a given. That is, unless you’re in China, where the app WeChat has in many ways supplanted email as the default communication system. Western publishers that seek to engage with Chinese researchers might struggle if they only use email. However, Charlesworth presented the ALPSP audience with a possible solution with their new product, Gateway. Gateway uses an API to allow journal-related communications to be sent to authors, reviewers, and editors via WeChat. This solution allows journals to meet Chinese researchers where they are, rather than trying to pull them into an (let’s face it, antiquated) email system.

Given this shift, eLife presented the ALPSP audience with Sciety, a new preprint evaluation platform that allows academics to review, curate, and share preprints and reviews with their peers. Preprint servers have also started to become social hubs for researchers to connect in more of a real time environment than traditional publishing tools. This system holds the promise of opening up peer review and publishing to a wider user base, allowing more people to curate and review research than ever before. The challenge presented by the scale of preprints is immense, and Sciety has the potential to reorganize how we deal with all this research in a social-focused way.

One more data point to mention: with the pervasive use of social media throughout the world, it is no surprise that academics would have their own version. Despite controversies, ResearchGate has maintained its position as the largest academic social network, connecting about 17 million users. With this many scholars connected, it’s possible we could see something like peer review networks emerge, though that doesn’t seem to be ResearchGate’s focus at the moment.

Beyond the PDF

A decade or so ago, getting “beyond the PDF” was still a new idea being speculated about at conferences. It is now a reality, with authors providing data sets, code, and detailed methods notebooks alongside their traditional manuscripts. As a partner to those authors, we’ve come up with ways to publish this content, but it can present special problems during peer review.

For starters, journals that employ an anonymized review model can find it quite difficult to extract identifiable information from complex content like code or reproducible methods. Sometimes an author’s institution might be inextricably linked to this content, making anonymization impossible – or at least impractical.

Other forms of content, like ultra-high-resolution images, can present logistical problems. Industry standard peer review management systems have hard limits on the size and format of files they can manage. For example, fields like pathology can rely on extremely detailed images of microscope slides, and these multi-gigabyte files are hard to move from author, to editor, to reviewer. Paleontology research can also require larger-than-usual images, as sharing highly detailed photos of artifacts is crucial to the field. Dealing with these kinds of challenges at the peer review stage can require a lot of creativity and patience for all involved without a more flexible solution.

Massive datasets can also present review challenges. Beyond the logistics of moving large files, there are also often more basic concerns, like is this data organized and labeled in a useful (and reusable) way? Is it actually possible to do a real review of a large dataset in the time that reviewers have to give to a paper? FAIR data principles are targeted at answering some of these questions, and services like Dryad and Figshare seek to help by curating and quality controlling datasets, ensuring they meet basic standards for organization, labeling, and metadata. But these services come with an additional cost that not everyone can bear. And a data review still depends on a reviewer willing to go the extra mile to actually review it.

Moving peer review beyond the PDF is still a work in progress, but many of these are solvable problems as our technology and internet infrastructure improve. Our J&J Editorial staff regularly handle content like videos, podcasts, and datasets. At EJournalPress, our platform is integrated with third parties including Dyrad, Code Ocean, and Vimeo. These integrations are an added convenience, as most journals and societies have to have direct agreements with third parties for the integrations to be fully utilized. But we often have to work around the peer review system, rather than with it, relying on basic cloud file servers (e.g., Dropbox or OneDrive) instead of more purpose-built technology.

Open/Pre-submission Review

Another decade-old conference trope was the constant talk about new open peer review models. You might recall that people were split on the wisdom of this approach, but the rise of preprints has done a lot to push open peer review and pre-submission review into the limelight.

Organizations like Review Commons are working with EJournalPress to make pre-submission and peer review a viable choice for authors by building review transfer relationships with more traditional journals. The Review Commons model is to take preprint submissions and have them peer reviewed. These reviews can then be shared with participating journals if authors choose to submit. Journal editors can use the existing Review Commons reviews to evaluate whether or not to publish the work. In data presented at ALPSP 2022, manuscripts that came into journals with reviews rarely needed to be sent out for further review. This has many benefits, saving the editor time in soliciting reviews, and giving a journal’s (probably over-taxed) reviewer pool a little break.

Review Commons is currently free for authors, being supported by a philanthropic grant. It will be fascinating to see if they are able to pivot towards a sustainable financial model in the future.

We won’t exhaust you with the long list of other open peer review initiatives, but suffice it to say, a lot of smart people are working hard on making this a standard part of research communication.

Developing the Next Generation of Reviewers

None of what we’ve written so far will matter one iota if there aren’t enough people in place to do the actual content reviews. One of the interesting revelations we had while managing journal peer review was the incredible range that exists in review quality. From the in-depth, multi-page discussions of every point and nuance of an author’s manuscript, to the dreaded “Looks good!” review, anyone in peer review can tell you that we can (and must!) do a better job training our reviewers. We can offer guideline documents and example reviews, but some people need a more engaging approach to understand and deliver what editors expect.

It would be lovely if reviewing was a required part of the science curriculum. It currently seems to happen in a piece-meal, ad hoc fashion, many times driven by people who are willing to just figure it out themselves. A more standardized approach is called for, especially as reviewable content becomes more complex and varied.

One of the best examples we’ve seen of reviewer training was actually a writer’s workshop for researchers wishing to submit to a medical journal. The EIC of the journal led this workshop, asking authors to submit their manuscripts ahead of time to serve as examples for the workshop. During the workshop, the EIC talked through several of these manuscripts, giving the authors invaluable feedback and what amounted to a free round of review prior to the official journal submission.

Though this workshop was ostensibly for authors, it was equally valuable for reviewers. Participants got to watch the EIC go through a paper in real time, ask questions, pose solutions, and talk through the subject matter with someone who had written hundreds and reviewed thousands of manuscripts. This program has always stuck out as a great way to train authors and reviewers, while also building the relationship between the journal and its community. Win-win-win!

Formal peer review training benefits all parties, such as the Genetics Society of America’s program which also includes direct feedback from journal editors. If you’re thinking of implementing something like this, your organization may wish to conduct a pilot prior to a full rollout. Another great model for peer review training is to pair mentors and mentees to simultaneously provide training and increase the number of high quality trained peer reviewers in the field broadly. If your team is willing to study the results of your reviewer training efforts, be sure to submit them to the next International Congress on Peer Review and Scientific Publication so that we can all benefit from your findings.

Demographics and Diversity

Many of the journals and publishers we work with are prioritizing diversity within their community by making efforts to extend their reach to people who might have been historically left out of the conversation. These organizations are also looking inward to seeing what their current level of diversity looks like in order to improve it.

Many organizations have begun collecting demographic information regarding their authors, reviewers, and editors. We recommend a thoughtful approach when embarking on this project, as it can be fraught with pitfalls and unexpected consequences if you don’t get it right. Before your organization embarks on this endeavor, please consider best practices regarding data collection and clearly define the initiative’s goals. Wondering where to start? Do a landscape scan of what other organizations aim to do with this data and please use standardized questions for self-reported diversity data collection.

Fortunately, many people are working on demographics data initiatives, and there is lots of support and ideas available from our community.

Summary

To put it mildly, there is a lot going on right now. The technology we use has the potential to upend the traditional research communication process, and in some cases (like preprints) it already has. With a host of new data, content, and equity concerns, people involved in the peer review process have more to deal with than ever before. And it’s unlikely that we’re doing enough to equip them with the knowledge and training they need to succeed. But we can do better, and I’m heartened to see the many people in and around our industry who are trying to improve the situation. From our end, eJournalPress is supporting societies and journals as they work to collect and evaluate demographic information and metadata, and J&J Editorial staff are always investigating ways to support journal innovations through a combination of technology and experienced staff.

I often think about peer review in the context of that old Churchill quote about democracy: “It has been said that democracy is the worst form of government, except all of those other forms that have been tried from time to time.” Peer review might not be the best method of scientific evaluation, but it’s the best we’ve got, and who knows, maybe we’ll make something even better. But until then, we’ve got work to do.

photo Anna Jester

Anna Jester, VP of Marketing and Sales, eJournalPress, Wiley Partner Solutions


photo Michael Casp

Michael Casp, Director of Business Development, J&J Editorial, Wiley Partner Solutions

Wiley Partner Solutions was gold sponsor of the ALPSP Conference and Awards held in Manchester UK in September 2022.  The 2023 ALPSP Conference will be held in Manchester from 13-15 September 2023.


Wiley is one of the world’s largest publishers and a global leader in scientific research and career-connected education. Founded in 1807, Wiley enables discovery, powers education, and shapes workforces. Through its industry-leading content, digital platforms, and knowledge networks, the company delivers on its timeless mission to unlock human potential. Visit us at Wiley.com. Follow us on Facebook, Twitter, LinkedIn and Instagram.

Thursday, 10 November 2022

Guest Post: Centering reproducibility and transparency in health science research

By Grainne McNamara, Research Integrity/Publication Ethics Manager at Karger, Silver sponsor of the ALPSP Conference and Awards 2022 

At Karger Publishers, we have over 130 years of experience connecting healthcare practitioners, researchers and patients with the latest research and emerging best practice, covering the whole cycle of knowledge. As a publisher in the health sciences with a broad audience, we have always centered the needs of our readers by tailoring our content to them. Complementing our long history of publishing journals and books for clinicians, researchers, and patients, in 2021 we launched the online blog The Waiting Room. In 2022 the Waiting Room Podcast launched, bringing breaking research to patients, caregivers, and the general public in easy-to-understand, jargon-free formats. Also this year, we made it possible for authors to submit plain language summaries in our journal Skin Appendage Disorders with their articles. These provide interested readers with easy-to-understand descriptions of the latest research in this field of dermatology. In all these developments, we are acutely aware of the great responsibility that comes with communicating health science research to a general audience.

Karger Publishers
At Karger Publishers, we employ a rigorous peer review process and are transparent about the evaluation criteria for articles that we publish. However, with increasing digitalization comes big challenges, as information can be disseminated, but also misinterpreted, at speed. With these challenges come opportunities to do better, and we asked ourselves: How can we do more for our community?

At Karger, we are open for Open. We have embraced the Open Science movement – in thought and action. Since 2021 all our research articles have been published with a data availability statement, directing readers to the location of the dataset(s) underlying these findings and providing thorough guidance to authors on the how and why to share their data. However, we see data availability statements as just the beginning.

Well-established reporting guidelines exist for almost every study type and provide a structure for authors, reviewers, and readers to understand what is, and should be, reported in an article. As such, adherence to community-standard reporting guidelines, such as CONSORT or PRISMA, has been the expectation for all our journals for many years. As a health sciences publisher, we know that case reports are an early stage but crucial part of evidence-based medicine decision making. That is why we have eight specialty Gold Open Access journals dedicated exclusively to communicating case reports. For case reports to be their most responsibly influential and effective, clear and transparent reporting, again, is crucial. That is why, as of September 2022, completion of the CARE checklist is a requirement for all submissions to these journals. We believe that by improving the consistency and transparency of case report reporting, we underscore the importance of transparency in health sciences research.

We present breaking research findings every day to our growing community and take great care in the trust placed in us by readers as a publisher of health sciences. We recognize that the ultimate guarantee of the reliability of a finding is its reproducibility - that is, the ability to find the same result again and again. We also know that transparency and detail of methodology are significant barriers to the reproducibility of a result and that adherence to reporting guidelines can improve the clarity of an article. That is why we recently expanded our guidance to authors on the use of reporting guidelines and endorsed the Materials Design Analysis Reporting Framework, as part of every journal’s reproducibility policy. We believe that by centering the reproducibility of methodology and reproducibility of results in our publications, we are progressing the conversation around reproducible-by-default health sciences research.

Grainne McNamara, Research Integrity/Publication Ethics Manager at Karger
We could not make these steps towards reproducibility-by-default without the support of our community of outstanding editors and reviewers. We aim to recognize and support our community of experts in a variety of ways. This includes providing training for the next generation of peer reviewers as well as interactive discussion webinars on the latest topics in peer review and reproducibility. We also benefit from the cross-publisher organizations, such as COPE and ALPSP, that facilitate conversations on best practices in reproducibility.

At Karger, as we expand our portfolio of research communication, we grow, in step, our focus on reliability and trust in those findings. By empowering researchers, institutions, funders, and policy makers to maximize impact in health sciences, we are taking strides toward our goal to help shape a smarter, more equitable future.


Karger was a silver sponsor of the ALPSP Conference and Awards held in Manchester UK in September 2022.  The 2023 ALPSP Conference will be 13-15 September 2023.